Pysam specifications

Information


Unique identifier OMICS_19073
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SAM,BAM,VCF,BCF,BED,GFF,GTF,FASTA,FASTQ
Output format SAM, BAM, VCF, BCF
Operating system Unix/Linux
Programming languages C, Python
License MIT License
Computer skills Advanced
Version 0.13
Stability Stable
Maintained Yes

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Additional information


https://readthedocs.org/projects/pysam/

Pysam citation

2017
PMCID: 5702242

[…] mate properties applying these requirements, we designed a new command-line program to implement these specific rules. the program, filter_by_mate, has been developed in python using the library pysam [32], a package to process bam (binary alignment/mapping) files. to speed-up the performances, we parallelized the genomic selection (both whole chromosomes or specific regions that users […]

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