PyCogent specifications

Unique identifier:
OMICS_14006
Alternative name:
Cogent
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Version:
1.9
Requirements:
Numpy, zlib, C compiler, Matploblib, Cython, mpi4py, SQLAlchemy
Name:
PYthon Comparative GENomic Toolkit
Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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PyCogent distribution

download

PyCogent support

Documentation

Maintainer

  • Rob Knight <>

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Credits

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Publications

Institution(s)

Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA; Computational Genomics Laboratory, John Curtin School of Medical Research, The Australian National University, Canberra, Australia; Thermo Fisher Scientific, Lafayette, CO, USA; Seattle Biomedical Research Institute, Seattle, WA, USA; Department of Biochemistry and Molecular Genetics, University of Colorado Health Sciences Center, Aurora, CO, USA; Science Applications International Corporation, Englewood, CO, USA; Department of Computer Science, University of Colorado, Boulder, CO, USA; Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; Walter and Eliza Hall Institute, Melbourne, Australia

Funding source(s)

This tool was funded by the Australian Partnership for Advanced Computing, Cray Australia Pty. Ltd., the Australian Research Council, the National Health and Medical Research Council, the Keck RNA Bioinformatics Initiative, Jane and Charlie Butcher Foundation, NIH Signaling and Cellular Regulation Training Grant, NIH Biophysics Training Grant, the National Academy Keck Futures Initiative

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