Q-nexus specifications

Information


Unique identifier OMICS_13791
Name Q-nexus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python
Computer skills Advanced
Stability Stable
Requirements
Q, MACS2, MACE
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Peter Robinson

Publication for Q-nexus

Q-nexus citation

library_books

Data exploration, quality control and statistical analysis of ChIP exo/nexus experiments

2017
Nucleic Acids Res
PMCID: 5587812
PMID: 28911122
DOI: 10.1093/nar/gkx594

[…] the overall quality of the ChIP-exo/nexus sequences. Collectively, these encompass all the metrics available for read-level data in ChiLin (), which is another QC tool for ChIP-seq and DNase-seq, and Q-nexus (), which is a ChIP-nexus analysis pipeline with QC features that are similar to that of FASTQC. The remaining metrics calculated by the ChiLin pipeline require the use of a peak calling algor […]

Q-nexus institution(s)
Institute for Medical and Human Genetics, Charité-Universitätsmedizin Berlin, Berlin, Germany; Berlin Brandenburg Center for Regenerative Therapies (BCRT), Charité-Universitätsmedizin Berlin, Berlin, Germany; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain: Faculty of Biology, Johannes Gutenberg University Mainz, Mainz, Germany; Institute of Molecular Biology, Mainz, Germany; Institute for Bioinformatics, Department of Mathematics and Computer Science, Freie Universität Berlin, Berlin, Germany; Labor für Pädiatrische Molekularbiologie, Charité-Universitätsmedizin Berlin, Berlin, Germany; Max Planck Institute for Molecular Genetics, Berlin, Germany; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
Q-nexus funding source(s)
This work was supported by the Bundesministerium für Bildung und Forschung (grants n°0313911 and 13GW0099), the European Community’s Seventh Framework Programme (grant n°602300) and the Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013-2017’.

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