QA-RecombineIt specifications

Information


Unique identifier OMICS_34413
Name QA-RecombineIt
Interface Web user interface
Restrictions to use None
Input data The sequence of the target protein and a set of models of the protein.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Marcin Pawlowski

Additional information


http://iimcb.genesilico.pl/qarecombineit/intro.html

Publication for QA-RecombineIt

QA-RecombineIt citations

 (2)
library_books

In Silico Modeling of Human α2C Adrenoreceptor Interaction with Filamin 2

2014
PLoS One
PMCID: 4128582
PMID: 25110951
DOI: 10.1371/journal.pone.0103099

[…] , HHpred , and Multicom server; these servers have been shown to be the best automatic methods for proteins structure modeling . In total we collected 145 initial models, which were submitted to the QA-RecombineIT server that operates through following two stages. In the first stage (QA-mode), the server predicts both the global quality of input models and provides estimates of local quality as […]

call_split

QA RecombineIt: a server for quality assessment and recombination of protein models

2013
Nucleic Acids Res
PMCID: 3692112
PMID: 23700309
DOI: 10.1093/nar/gkt408
call_split See protocol

[…] QA-RecombineIt relies on five different MQAP procedures. The MQAPs can be divided into two categories: (i) single-model MQAPs, i.e. methods that assess the quality of a single model and (ii) clusterin […]

QA-RecombineIt institution(s)
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Warsaw, Poland; Battelle Center for Mathematical Medicine, The Research Institute at Nationwide Children’s Hospital, Columbus, OH, USA; Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland
QA-RecombineIt funding source(s)
Supported by The 7th Framework Program of the European Commission [EC FP7, REGPOT grant HEALTHPROT, 229676]. Polish Ministry of Science [N301 10632/ 3600], and by the Innovative Economy-European Regional Development Fund of the European Union [EU, grant POIG.02.03.00-00-003/09].

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