qaTools statistics

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Citations per year

Number of citations per year for the bioinformatics software tool qaTools

Tool usage distribution map

This map represents all the scientific publications referring to qaTools per scientific context
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Associated diseases


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qaTools specifications


Unique identifier OMICS_27493
Name qaTools
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BAM,SAM
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Stability Stable
Maintained Yes




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qaTools citations


Subspecies in the global human gut microbiome

Mol Syst Biol
PMCID: 5740502
PMID: 29242367
DOI: 10.15252/msb.20177589
call_split See protocol

[…] Specifically, reads were mapped at 97% identity and multiple mappers were discarded. Computation of genome coverage for each specI cluster was performed using qaCompute (, resulting in estimations of both horizontal and vertical coverage per sample, per genome. […]


The microbiomes of blowflies and houseflies as bacterial transmission reservoirs

Sci Rep
PMCID: 5701178
PMID: 29176730
DOI: 10.1038/s41598-017-16353-x
call_split See protocol

[…] were counted only when they were mapped with greater than 97% identity. We computed horizontal and vertical coverage per sample over each of the genomes using qaCompute ( alignment results were imported into MEGAN 5 and taxa assignments were done with strict parameters of the LCA-assignment algorithm and considering the read length generated for each sampl […]

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