QC3 pipeline

QC3 specifications

Information


Unique identifier OMICS_05450
Name QC3
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for QC3

QC3 IN pipeline

2016
PMCID: 5084272
PMID: 27091450
DOI: 10.1083/jcb.201507036

[…] nextseq 500 (illumina) at paired-end 150 bp targeting 45 million reads per sample., wes data quality control was performed at multiple stages: raw and alignment as suggested by (guo et al., 2014a). qc3 (guo et al., 2014b) was used to check the quality. the two samples sequenced 91 and 100 million reads each, allowing high coverage in the exome region, including the kif15 gene. during raw data […]

QC3 institution(s)
Vanderbilt Ingram Cancer Center, Center for Quantitative Sciences, Nashville, TN, USA; Center for Human Genetics Research, Vanderbilt University Medical Center, Nashville, TN, USA

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