QChIPat statistics

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Citations per year

Number of citations per year for the bioinformatics software tool QChIPat

Tool usage distribution map

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QChIPat specifications


Unique identifier OMICS_06329
Name QChIPat
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Programming languages C++, Perl, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for QChIPat

QChIPat citation


A comprehensive comparison of tools for differential ChIP seq analysis

Brief Bioinform
PMCID: 5142015
PMID: 26764273
DOI: 10.1093/bib/bbv110

[…] ts (sharp TF binding and broad histone modification enrichment), we observed considerable differences in the number of reported DR (A and B). The sets of DR ranged from no detected differential peak (QChIPat) to about 150,000 DR for ODIN-poisson for the FoxA1 data set. Five of the methods had a relatively consistent number of DR, in the range of 25,000–35,000 peaks. Among the tools that were given […]

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