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QCScreen specifications


Unique identifier OMICS_10361
Name QCScreen
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Rainer Schuhmacher <>

Publication for QCScreen

QCScreen citations


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] for treatment effects with anova. by contrast, model population analysis–random forests (mpa-rf) [] combines random forests with model population analysis for selecting informative metabolites. qcscreen [] helps to verify data consistency, measurement precision, and stability of large-scale biological experiments., metabolite annotation is often considered the most challenging step […]


Stable Isotope Assisted Evaluation of Different Extraction Solvents for Untargeted Metabolomics of Plants

PMCID: 4964393
PMID: 27367667
DOI: 10.3390/ijms17071017

[…] retention time stability, peak area precision as well as mass accuracy were determined for all qc samples to verify proper measurement performance throughout the whole sequence with the help of qcscreen [] (data not shown)., lc-hrms data files were centroided and converted to the mzxml format using the proteowizard package [,]; version 3.0.5533. the data files were then processed […]

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QCScreen institution(s)
Center for Analytical Chemistry, Department of Agrobiotechnology (IFA-Tulln), University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
QCScreen funding source(s)
This work was funded by the Austrian Science Fund (project SFB Fusarium 3706-B11).

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