QDMR specifications

Information


Unique identifier OMICS_00623
Name QDMR
Alternative name Quantitative Differentially Methylated Region
Software type Application/Script, Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.0
Stability Stable
Requirements EpiDiff
Maintained Yes

Versioning


Version Operating System DOI Size Download Info
1.0
32/64 bits
10.24347/OMIC_623_1.0/wlm8664 21.17 Mo get_app

Documentation


Maintainer


Additional information


QDMR is embedded in EpiDiff as the second module.

QDMR article

QDMR citation

2016
PMCID: 4957136

[…] the four genotypes. next, the mean methylation levels of cpgs covered with at least 5 reads in dmrs were computed in each genotype. finally, the dmrs were further assessed by a quantitative method qdmr based on shannon entropy among the four genotypes62. the dmrs with default entropy value <2 remained. to study the patterns of dynamic change of dna methylation and their coordinate […]

QDMR institution(s)
College of Bioinformatics Science and Technology, Harbin Institute of Technology, Harbin, China; The Third Affiliated Hospital, Harbin Medical University, Harbin, China; Department of Life Science and Engineering, Harbin Institute of Technology, Harbin, China

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