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Quantitative Differentially Methylated Region QDMR

Allows users to quantify methylation difference and identify differentially methylated regions (DMRs) across multiple samples. QDMR is a quantitative approach genome-wide quantitative comparisons of DNA methylation among multiple samples based on Shannon entropy. The software can be used as an effective tool for the quantification of methylation difference and identification of DMRs across multiple samples.

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QDMR forum

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QDMR versioning

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Version Operating System DOI Size Download Info
1.0
32/64 bits
21.17 Mo process validation...

QDMR classification

QDMR specifications

Software type:
Application/Script, Package/Module
Restrictions to use:
None
Programming languages:
Java
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface, Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Requirements:
EpiDiff

QDMR support

Maintainer

Additional information

QDMR is embedded in EpiDiff as the second module.

Credits

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Publications

Institution(s)

College of Bioinformatics Science and Technology, Harbin Institute of Technology, Harbin, China; The Third Affiliated Hospital, Harbin Medical University, Harbin, China; Department of Life Science and Engineering, Harbin Institute of Technology, Harbin, China

Link to literature

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