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Protocols

Qlucore specifications

Information


Unique identifier OMICS_05695
Name Qlucore
Alternative names Qlucore Omics Explorer, Omics Explorer
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use License purchase required
Input format TXT,CSV,CEL,BAM,VCF,BED,GTF
Output format PDF
Biological technology Illumina, Affymetrix, Agilent Technologies, Luminex
Operating system Mac OS, Windows
License Commercial
Computer skills Medium
Version 3.3
Stability Stable
Free trial Yes
Registration required Yes
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Qlucore Omics Explorer Team

Qlucore citations

 (37)
library_books

Importance of Comprehensive Molecular Profiling for Clinical Outcome in Children With Recurrent Cancer

2018
PMCID: 5920151
PMID: 29732366
DOI: 10.3389/fped.2018.00114

[…] an; Affymetrix, GSE108089). Data were analyzed using NEXUS (BioDiscovery). Expression levels were analyzed using Affymetrix's GeneChip® Human Genome U133 Plus 2.0 Array, with subsequent processing by Qlucore (Figure ). […]

library_books

Current applications of antibody microarrays

2018
PMCID: 5830343
PMID: 29507545
DOI: 10.1186/s12014-018-9184-2

[…] s of image capture, data preprocessing, differential expression detection, clustering. There are now several R packages available to support some of these steps, such as Limma [], Clusterprofiler [], Qlucore Omics Explorer (http://www.qlucore.com) and IPA (http://www.ingenuity.com). DNA microarray-specific MIAME standards have been applied in Gene Expression Omnibus (GEO), which includes some data […]

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Transcriptomic Response of Resistant (PI613981–Malus sieversii) and Susceptible (“Royal Gala”) Genotypes of Apple to Blue Mold (Penicillium expansum) Infection

2017
Front Plant Sci
PMCID: 5696741
PMID: 29201037
DOI: 10.3389/fpls.2017.01981
call_split See protocol

[…] 0) vs. log2(RG48P/RGS0); FDR p ≤ 0.01] during the time course of the infection. Multivariate analysis, such as Principal Coordinates Analysis (PCoA) and construction of heatmaps, were performed using Qlucore v3.2 (Qlucore, Lund, Sweden) bioinformatic software. InteractiVenn (http://www.interactivenn.net/) online software was used to construct the Venn diagrams (Heberle et al., ). Analysis of biolo […]

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Neuroblastoma cells undergo transcriptomic alterations upon dissemination into the bone marrow and subsequent tumor progression

2017
Int J Cancer
PMCID: 5725737
PMID: 28921546
DOI: 10.1002/ijc.31053
call_split See protocol

[…] im = 0.4). In addition, we used DESeq2 to generate a normalized (function “fpm”, robust = TRUE) and variance‐stabilized (function “vst”) gene expression matrix for import into and further analysis in Qlucore v3.2. All samples used in this study passed internal quality control (QC) checks, including base qualities, mapping rates, duplication rates, and 5′–3′ coverage, which were performed on the ba […]

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Potassium as a pluripotency associated element identified through inorganic element profiling in human pluripotent stem cells

2017
Sci Rep
PMCID: 5504050
PMID: 28694442
DOI: 10.1038/s41598-017-05117-2
call_split See protocol

[…] on Omnibus (GEO). Data were filtered for detection P value < 0.01 in GenomeStudio (Illumina, Hayward, CA), and normalized using the LUMI package with RSN (Robust spline normalization) algorithm in R. Qlucore Omics Explorer 3.0 was used to perform differential gene expression analysis, hierarchical clustering, and the ontology analysis of differentially expressed genes. The test of cellular pluripo […]

library_books

Anxiety Associated Increased CpG Methylation in the Promoter of Asb1: A Translational Approach Evidenced by Epidemiological and Clinical Studies and a Murine Model

2017
PMCID: 5729551
PMID: 28540928
DOI: 10.1038/npp.2017.102

[…] Data were analyzed using R 3.2 (used package: beadarray) and Omics Explorer 3.1 (Qlucore). Values are presented as technical batch-corrected residuals. […]

Citations

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Qlucore institution(s)
Qlucore
Qlucore funding source(s)
Supported by the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement 601851.

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