QmRLFS-finder specifications

Information


Unique identifier OMICS_08058
Name QmRLFS-finder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data DNA/RNA sequence(s)
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Vladimir Kuznetsov <>

Information


Unique identifier OMICS_08058
Name QmRLFS-finder
Interface Web user interface
Restrictions to use None
Input data DNA/RNA sequence(s)
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Vladimir Kuznetsov <>

Publication for QmRLFS-finder

QmRLFS-finder in publication

PMCID: 4951197
PMID: 27431763
DOI: 10.7554/eLife.13087.060

[…] were quantified using homer at tss regions. statistical significance was estimated separately for the two different restriction enzyme digestions. rlfs motif search was performed using the software qmrlfs-finder that predicts r-loop forming sequences based on structural models of known sequences (). the fasta input file was generated by extracting dna sequences based on the hg19 genome […]


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QmRLFS-finder institution(s)
Department of Genome and Gene Expression Data Analysis, Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore
QmRLFS-finder funding source(s)
Biomedical Research Council of Agency for Science, Technology and Research (A*STAR), Singapore

QmRLFS-finder review

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It can predict more target compare to the previous one.