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Qprob specifications

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Unique identifier OMICS_11955
Name Qprob
Interface Web user interface
Restrictions to use None
Input data Protein sequence
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Information


Unique identifier OMICS_11955
Name Qprob
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Qprob

Qprob citations

 (3)
call_split

Identify High Quality Protein Structural Models by Enhanced K Means

2017
Biomed Res Int
PMCID: 5381204
PMID: 28421198
DOI: 10.1155/2017/7294519
call_split See protocol

[…] 0 is a scale to normalize the match difference. “Max” denotes the maximum value after optimal spatial superposition. RMSD, TM-score, and other metrics, such as GDT-TS (Global Distance Test) score and Qprob [], can be used to evaluate the distance between the two structures. SPICKER enhanced the initial centers of the classical K-means algorithm.One of the key limitations of the K-means algorithm c […]

call_split

ProQ3: Improved model quality assessments using Rosetta energy terms

2016
Sci Rep
PMCID: 5048106
PMID: 27698390
DOI: 10.1038/srep33509
call_split See protocol

[…] In this section, we compare the newly developed methods ProQRosFA, ProQRosCen and ProQ3 with their predecessor ProQ2 and other publicly available single-model methods: QMEAN, Qprob, SMOQ, DOPE, dDFIRE on the CASP11 and CAMEO data sets (see Methods). We compare the method performance in three categories: local (residue) level correlations, global (protein) level correlation […]

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Analysis of pattern overlaps and exact computation of P values of pattern occurrences numbers: case of Hidden Markov Models

2014
PMCID: 4307674
PMID: 25648087
DOI: 10.1186/s13015-014-0025-1

[…] tem of a set union is a set with already known probability or concatenation of such sets. In the latter case the probability Prob(q1,L1·L2,q2) can be computed by the formula (20)Prob(q1,L1·L2,q2)=∑q~∈QProb(q1,L1,q~)·Prob(q~,L2,q2),where Prob(q′,L,q) is a probability that, being in the state q′, the chain will go to the state q emitting a word t from the set L.Let n,s be integers, w∈OV(ℋ), r∈DROV(ℋ […]


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Qprob institution(s)
Department of Computer Science, University of Missouri, Columbia, MO, USA; Informatics Institute, University of Missouri, Columbia, MO, USA; Bond Life Science Center, University of Missouri, Columbia, MO, USA
Qprob funding source(s)
The work is supported by US National Institutes of Health (NIH) grant (R01GM093123).

Qprob review

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ahjxcrz

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Very interesting tool, and easy to install! Strongly recommended to have a try!