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Qscore specifications

Information


Unique identifier OMICS_09171
Name Qscore
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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Publication for Qscore

Qscore in publications

 (46)
PMCID: 5932350
PMID: 29755418
DOI: 10.3389/fmicb.2018.00643

[…] miseq machine. during the run roughly 1,000 (k/mm2) clusters were sequenced, generating ca. 15 million reads passing filter specs. over 75% of the sequencing and index reads were found with a qscore ≥30. all raw data fastq files were recovered from the machine and used for further sequence data processing as outlined below., a total of 11,096,494 reads with an average length of 242 bp […]

PMCID: 5879793
PMID: 29632541
DOI: 10.3389/fimmu.2018.00628

[…] from imgt, rejecting reads with a bitscore <75 that indicates a match to less than 50 bp of bcr sequence. we also used the igblast results to orient the paired-end reads. poor quality bases with qscore ≤3 were clipped using nesoni clip that also removed reads with <25 bp remaining in either end. we then merged paired-end reads having ≥10 bp overlap with at least 90% identity, […]

PMCID: 5786109
PMID: 29374279
DOI: 10.1038/s41598-018-20057-1

[…] the following criteria: (1) remove reads containing adapters; (2) remove reads containing n > 10%, where n represents a base that cannot be determined; (3) remove reads containing low-quality (qscore ≤ 5) bases accounting for more than 50% of the total bases. next, rna-seq reads were mapped to the human transcriptome using tophat2 program version 2.1.1; the genes.gtf file in the illumina […]

PMCID: 5751178
PMID: 29189732
DOI: 10.3390/ijms18122575

[…] relative lower intensity (, lane 1). the 115 kda band was excised from the sds-page gel (, lane 2) and analyzed by lc-ms/ms. candidate proteins identified in the 115 kda band were ranked by protein qscore [] (). database searches with the peptides recovered from the 115 kda band revealed the presence of apn isoforms with relative higher protein qscore among candidate proteins (p < 0.05) (). […]

PMCID: 5578639
PMID: 28859111
DOI: 10.1371/journal.pone.0183663

[…] biotechnology information sequence read archive (accession number srp083934)., to survey bacterial communities in s. gracillimum from various locations, v1-v4 sequence reads were sorted and trimmed (qscore = 27, maxhomop = 8, maxambig = 0) by mothur software []. furthermore, filtered sequences were subjected to chimera removal by usearch (using ribosomal database project (rdp) gold database). […]


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Qscore institution(s)
Division of Immunology, Beckman Research Institute of the City of Hope, Duarte, CA, USA

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