QSEA specifications


Unique identifier OMICS_14547
Alternative name Quantitative Sequencing Enrichment Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A reference genome, a calibration data or general assumption, a genome annotation.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.6.0
Stability Stable
limma, methods, stats, graphics, BiocGenerics, IRanges, GenomicRanges, Rsamtools, utils, testthat, GenomeInfoDb, Biostrings, rtracklayer, BiocStyle, grDevices, R(>=3.5), BiocParallel, BSgenome, BSgenome.Hsapiens.UCSC.hg19, gtools, rmarkdown, knitr, MEDIPSData, zoo, HMMcopy
Maintained Yes




No version available



  • person_outline Matthias Lienhard

Publication for Quantitative Sequencing Enrichment Analysis

QSEA institution(s)
Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany; Functional Epigenomics, University Hospital Cologne, Cologne, Germany; Experimental Pharmacology & Oncology Berlin-Buch GmbH, Berlin, Germany; Department of Thoracic Surgery, ELK Berlin Chest Hospital, Berlin, Germany; Cancer Genome Research Group, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany; Sequencing Core Facility, Max-Planck-Institute for Molecular Genetics, Berlin, Germany; Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Department of Vertebrate Genomics, Max-Planck-Institute for Molecular Genetics, Berlin, Germany
QSEA funding source(s)
This work was supported by German Federal Ministry of Education and Research under its e:BIO program [0316190, 0316065]; European Commission under its 7th Framework program [602156]; Lichtenberg program of VolkswagenStiftung; IMPRS-CBSC of the Max-Planck-Society.

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