QSEA specifications

Information


Unique identifier OMICS_14547
Name QSEA
Alternative name Quantitative Sequencing Enrichment Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A reference genome, a calibration data or general assumption, a genome annotation.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.6.0
Stability Stable
Requirements
limma, methods, stats, graphics, BiocGenerics, IRanges, GenomicRanges, Rsamtools, utils, testthat, GenomeInfoDb, Biostrings, rtracklayer, BiocStyle, grDevices, R(>=3.5), BiocParallel, BSgenome, BSgenome.Hsapiens.UCSC.hg19, gtools, rmarkdown, knitr, MEDIPSData, zoo, HMMcopy
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Matthias Lienhard

Publication for Quantitative Sequencing Enrichment Analysis

QSEA institution(s)
Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany; Functional Epigenomics, University Hospital Cologne, Cologne, Germany; Experimental Pharmacology & Oncology Berlin-Buch GmbH, Berlin, Germany; Department of Thoracic Surgery, ELK Berlin Chest Hospital, Berlin, Germany; Cancer Genome Research Group, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany; Sequencing Core Facility, Max-Planck-Institute for Molecular Genetics, Berlin, Germany; Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Department of Vertebrate Genomics, Max-Planck-Institute for Molecular Genetics, Berlin, Germany
QSEA funding source(s)
This work was supported by German Federal Ministry of Education and Research under its e:BIO program [0316190, 0316065]; European Commission under its 7th Framework program [602156]; Lichtenberg program of VolkswagenStiftung; IMPRS-CBSC of the Max-Planck-Society.

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