tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

QSLiMFinder

Online

A modification of the basic SLiMFinder tool to specifically look for SLiMs shared by a query sequence and one or more additional sequences. To do this, SLiMBuild first identifies all motifs that are present in the query sequences before removing it (and its UPC) from the dataset. The rest of the search and stats takes place using the remainder of the dataset but only using motifs found in the query. The final correction for multiple testing is made using a motif space defined by the original query sequence, rather than the full potential motif space used by the original SLiMFinder. This is offset against the increased probability of the observed motif support values due to the reduction of support that results from removing the query sequence but could potentially still identify SLiMs will increased significance.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible

0 user reviews

0 user reviews

No review has been posted.

QSLiMFinder forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

QSLiMFinder versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.

No versioning.

QSLiMFinder classification

  • Animals
  • Fungi
  • Plants
  • Protists

QSLiMFinder specifications

Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

QSLiMFinder support

Maintainer

  • Richard J. Edwards <>

Additional information

A free trial is available on the site.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.

Publications

Institution(s)

Centre for Biological Sciences, University of Southampton, Southampton, UK

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.