QTL Cartographer pipeline

QTL Cartographer specifications


Unique identifier OMICS_07101
Name QTL Cartographer
Alternative names WinQTL Cartogarpher, WinQTL Cart, Windows QTL Cartographer
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes


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QTL Cartographer IN pipelines

PMCID: 5776132
PMID: 29387076
DOI: 10.3389/fpls.2017.02269

[…] described by liu et al. (2014), a high density linkage map was constructed from the slaf genotyping data of 103 f2:4 lines. next, qtl were identified by the composite interval mapping method using windows qtl cartographer (silva et al., 2012). the lod threshold of qtl significance was determined by a permutation test (1,000 replications) at p < 0.05., the genomic resequencing data […]

PMCID: 5155538
PMID: 27797723
DOI: 10.1242/bio.021071

[…] using mapmaker/exp 3.0 (lander et al., 1987). distances between markers were presented in centimorgan (cm) derived using kosambi function. qtls were determined with the interval mapping of windows qtl cartographer 2.5 (wang et al., 2012). for the nils, two-way anova was conducted to test the main and digenic interaction effect between the two loci. the analysis was performed with sas […]

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