QTLMap statistics

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QTLMap specifications

Information


Unique identifier OMICS_07104
Name QTLMap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A genetic map, a pedigree, some markers genotypes and traits values.
Output data A general listing.
Operating system Unix/Linux
Programming languages Fortran
Computer skills Advanced
Stability Stable
Maintained Yes

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QTLMap in publications

 (35)
PMCID: 5431851
PMID: 28500343
DOI: 10.1038/s41598-017-02052-0

[…] size averaged 97 (±16) daughters per buck (range: 60 to 115)., for qtl detection, both linkage analyses (la) and linkage disequilibrium (ld) using interval mapping were applied to the data using the qtlmap software (ref. ; http://dga7.jouy.inra.fr/qtlmap/). for la, interval mapping was performed with the likelihood ratio test (lrt) using within-sire linear regression. the qtl effect (average […]

PMCID: 5399330
PMID: 28427323
DOI: 10.1186/s12711-017-0314-5

[…] × 10−5 (1/10329). manhattan plots of the gwas results for each trait were produced with the qqman package available from r (version 3.1.2) []., single qtl detection analyses were carried out with the qtlmap software [], which was developed to handle data on f2 individuals for designs from outbred populations. qtlmap is an interval mapping method, in which qtl are detected using a likelihood ratio […]

PMCID: 5396126
PMID: 28424047
DOI: 10.1186/s12711-017-0313-6

[…] for each mule duck, and the performance of each g2 female was computed as the average of the residual effects of her three male mule duck offspring., qtl detection was carried out using the qtlmap software [–] in order to implement linkage analysis according to the interval mapping method []. for each chromosome, first the probabilities of each possible phase of the g1 male founders […]

PMCID: 5455980
PMID: 28379502
DOI: 10.1093/molbev/msx114

[…] the major locus and identify the shortest woolly haplotype, we combined genotyping results from experimental and production populations. a linkage analysis within each ram family, performed with the qtlmap software (), showed that three out of eight sires were heterozygous for qtloar25 (a, online). after phasing haplotypes for the region of interest, we used the software plink () to identify […]

PMCID: 5217106
PMID: 27836907
DOI: 10.1534/g3.116.033241

[…] high recombination on the map were investigated by examining whether removal of individual snps altered map distance., eqtl were identified using an interval mapping approach () implemented in qtlmap 0.9.0 (http://www.inra.fr/qtlmap; qtlmap option: –data-transcriptomic). offspring with missing genotypes at > 60% of the markers in the linkage map were removed from the analysis. […]


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QTLMap institution(s)
INRA Agrocampus Ouest, UMR0598, Rennes, France; INRA, UR0631, Castanet Tolosan, France; INRA AgroParisTech, UMR1313, Jouy en Josas, France

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