QTrim specifications

Unique identifier:
OMICS_01089
Software type:
Application/Script
Restrictions to use:
None
Input format:
FASTQ, FASTA + QUAL
Output format:
FASTQ, FASTA + QUAL
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes
Name:
QTrim
Interface:
Command line interface
Input data:
High throughput sequence data
Output data:
High quality reads
Biological technology:
Roche
Programming languages:
Python
Computer skills:
Advanced
Requirements:
BioPython, Numpy, Matplotlib

versioning

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QTrim specifications

Unique identifier:
OMICS_01089
Interface:
Web user interface
Input data:
High throughput sequence data
Output data:
High quality reads
Programming languages:
Python
Computer skills:
Basic
Maintained:
Yes
Name:
QTrim
Restrictions to use:
None
Input format:
FASTQ, FASTA + QUAL
Output format:
FASTQ, FASTA + QUAL
License:
GNU General Public License version 3.0
Stability:
Stable

QTrim support

Maintainer

  • Simon A. Travers <>
  • Simon A. Travers <>

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Credits

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Publications

Institution(s)

South African National Bioinformatics Institute, SA MRC Bioinformatics Unit, University of the Western Cape, Bellville, South Africa; Ryan Institute, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland; Retroviruses and Molecular Evolution, CNRS-UPR 9002, Institut de Biologie Moléculaire et Cellulaire, Strasbourg, France; School of Life Sciences, University of Warwick, Coventry, UK

Funding source(s)

This work was supported by a student bursary from Atlantic Philanthropies (grant # 62302) and by an award from the South African Department of Science and Technology. This work was further supported by Science Foundation Ireland (grant n°07/RFP/EEEOBF424).

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