QTrim specifications

Information


Unique identifier OMICS_01089
Name QTrim
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data High throughput sequence data
Input format FASTQ, FASTA + QUAL
Output data High quality reads
Output format FASTQ, FASTA + QUAL
Biological technology Roche
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements BioPython, Numpy, Matplotlib
Maintained Yes

Versioning


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Maintainer


  • person_outline Simon A. Travers <>

Information


Unique identifier OMICS_01089
Name QTrim
Interface Web user interface
Restrictions to use None
Input data High throughput sequence data
Input format FASTQ, FASTA + QUAL
Output data High quality reads
Output format FASTQ, FASTA + QUAL
Programming languages Python
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Simon A. Travers <>

QTrim article

QTrim institution(s)
South African National Bioinformatics Institute, SA MRC Bioinformatics Unit, University of the Western Cape, Bellville, South Africa; Ryan Institute, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland; Retroviruses and Molecular Evolution, CNRS-UPR 9002, Institut de Biologie Moléculaire et Cellulaire, Strasbourg, France; School of Life Sciences, University of Warwick, Coventry, UK
QTrim funding source(s)
This work was supported by a student bursary from Atlantic Philanthropies (grant # 62302) and by an award from the South African Department of Science and Technology. This work was further supported by Science Foundation Ireland (grant n°07/RFP/EEEOBF424).

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