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- person_outline Shantanu Chowdhury
Publications for QuadBase
Putative HIV and SIV G Quadruplex Sequences in Coding and Noncoding Regions Can Form G Quadruplexes
[…] cleotides) to the putative sequence, it was also judged to be suitable for inclusion. In principle, we applied criteria similar to those utilized by QGRS mapper and the more comprehensive mining tool QuadBase2, a program which predicts G-quadruplex forming G-rich sequences (QGRS) in nucleotide sequences [, ]. The scores of G-quadruplex putative sequences found in HIV genomes were also analyzed usi […]
Evidence for a quadruplex structure in the polymorphic hs1.2 enhancer of the immunoglobulin heavy chain 3’ regulatory regions and its conservation in mammals
[…] features are analyzed, identified and/or graphically visualized using the UCSC Genome Browser (http://genome.ucsc.edu/cgi-bin/hgGateway). The G‐quadruplex structure consensus sites were identified by Quadbase (http://quadbase.igib.res.in) and QGRS Mapper (http://bioinformatics.ramapo.edu/QGRS). […]
G Quadruplexes in Pathogens: A Common Route to Virulence Control?
[…] tify genomic regions that may form G4s, termed putative quadruplex sequences (PQS) or G4 motifs. Predictive algorithms (reviewed in ), including quadparser , G4P calculator , QGRS mapper  and QuadBase , have been developed to identify PQS. These algorithms can rapidly analyse large amounts of data, including whole genome sequences. […]
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