QuadGT statistics

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Associated diseases

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QuadGT specifications

Information


Unique identifier OMICS_02108
Name QuadGT
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


QuadGT in publications

 (3)
PMCID: 5636151
PMID: 29020110
DOI: 10.1371/journal.pone.0186175

[…] identified by all 13 exome callers or all except one () in the pure tumor data. only six out of 13 tools managed a sensitivity above 90% (); of these, ebcall, jointsnvmix, mutect, lofreqstar and quadgt were able to also reach more than 90% precision (). given 636 gold standard snvs, e. g., mutect called 592 with 14 false positives, and lofreqstar 582 with 56 false positives. vardict […]

PMCID: 4179624
PMID: 25288881
DOI: 10.4137/CIN.S13779

[…] diploid genotype likelihoods or shared allele frequency between the samples. a number of somatic mutation tools have emerged in the past 2 years, including deepsnv, strelka, mutationseq, muttect, quadgt (http://www.iro.umontreal.ca/~csuros/quadgt), seurat, shimmer and solsnp (http://source-forge.net/projects/solsnp), jointsnvmix, somaticsniper, varscan2, and virmid. each of them is equipped […]

PMCID: 3622648
PMID: 23734724
DOI: 10.1186/1471-2105-14-S5-S3

[…] genome pair and two parental genomes., we describe the algorithms and data structures for genotype inference, model parameter training. we implemented the methods in an open-source software package (quadgt) that uses the standard file formats of the 1000 genomes project. our method's utility is illustrated on quartets from the all cohort., acute lymphoblastic leukemia (all) is the most common […]


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