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QualiMap | Evaluating next-generation sequencing alignment data

A Java application that supports user-friendly quality control of mapping data, by considering sequence features and their genomic properties. Qualimap takes sequence alignment data and provides graphical and statistical analyses for the evaluation of data. Qualimap 2 represents a next step in the quality control analysis of high-throughput sequencing data. Along with comprehensive single-sample analysis of alignment data, it includes new modes that allow simultaneous processing and comparison of multiple samples.

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QualiMap forum

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QualiMap classification

QualiMap specifications

Unique identifier:
OMICS_02133
Interface:
Command line interface, Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
2.1.2
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java, R
Computer skills:
Advanced
Stability:
Stable

QualiMap distribution

versioning

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QualiMap support

Documentation

Maintainer

  • Fernando García-Alcalde <>

Credits

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Publications

Institution(s)

Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, Valencia, Spain; Department of Molecular Biology, Max-Planck Institute for Infection Biology, Berlin, Germany

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.