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QCGWAS | A flexible R package for automated quality control of genome-wide association results

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An R package that automates the quality control of genome-wide association result files. Its main purpose is to facilitate the quality control of a large number of such files before meta-analysis. Alternatively, it can be used by individual cohorts to check their own result files. QCGWAS is flexible and has a wide range of options, allowing rapid generation of high-quality input files for meta-analysis of genome-wide association studies.

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QCGWAS forum

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QCGWAS classification

QCGWAS specifications

Unique identifier:
OMICS_02203
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Name:
Quality Control of Genome Wide Association Study results
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.0-8
Maintained:
Yes

QCGWAS distribution

versioning

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No versioning.

QCGWAS support

Documentation

Maintainer

  • Peter J. van der Most <>

Credits

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Publications

Institution(s)

Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, Netherlands

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