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Quality control software tools | Whole-exome sequencing

Targeted enrichment sequencing by next-generation sequencing is a common approach to interrogate specific loci or the whole exome in the human genome. The efficiency and the lack of bias in the enrichment process need to be assessed as a quality…
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TEQC
Desktop

TEQC

Provides quality assessment of target enrichment experiments. TEQC enables…

Provides quality assessment of target enrichment experiments. TEQC enables users to leverage a multitude of methods to monitor the target enrichment process. Moreover, TEQC allows to evaluate the…

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NGSCheckMate
Desktop

NGSCheckMate

Verifies sample identities from FASTQ, BAM or VCF files. NGSCheckMate uses a…

Verifies sample identities from FASTQ, BAM or VCF files. NGSCheckMate uses a model-based method to compare allele read fractions at known single-nucleotide polymorphisms (SNPs), considering…

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NGSrich
Desktop

NGSrich

Targets enrichment performance for next-generation sequencing (NGS). NGSrich…

Targets enrichment performance for next-generation sequencing (NGS). NGSrich meets the demand for a detailed, summarized, and exon-wise analysis of the target enrichment performance of NGS libraries.…

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Preseq
Desktop

Preseq

A method to predict the genome coverage of a deep sequencing experiment using…

A method to predict the genome coverage of a deep sequencing experiment using information from an initial shallow sequencing experiment mapped to a reference genome.

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ngsCAT
Desktop

ngsCAT next-generation sequencing data Capture Assessment Tool

A tool that takes the information of the mapped reads and the coordinates of…

A tool that takes the information of the mapped reads and the coordinates of the targeted regions as input files, and generates a report with metrics and figures that allows the evaluation of the…

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QC3
Desktop

QC3

A quality control tool designed for DNA sequencing data for raw data,…

A quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.

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