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QuaMeter specifications


Unique identifier OMICS_08217
Name QuaMeter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for QuaMeter

QuaMeter citations


QCloud: A cloud based quality control system for mass spectrometry based proteomics laboratories

PLoS One
PMCID: 5764250
PMID: 29324744
DOI: 10.1371/journal.pone.0189209

[…] tion, and implementation of user-friendly interfaces to overcome what otherwise would be a tedious and labour-intensive task. In this regard, soon after the release of MSQC, another software package, QuaMeter, was released that made use of existing proteomics software tools to get over some initial limitations of its predecessor in an effort to improve its usability and dissemination among proteom […]


Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

J Proteome Res
PMCID: 4779376
PMID: 26653538
DOI: 10.1021/acs.jproteome.5b00859

[…] the quadrupole ion trap. All raw data files are available from https://cptac-data-portal.georgetown.edu/cptacPublic/ under the name CompRef. All files were subjected to quality assessment through the QuaMeter IDFree mode. The resulting tables are available as a Microsoft Excel spreadsheet in the Supporting Information. Instrument-specific details are provided in Supporting Information Method A. […]


Proteomic analysis of colon and rectal carcinoma using standard and customized databases

Sci Data
PMCID: 4477697
PMID: 26110064
DOI: 10.1038/sdata.2015.22

[…] The raw data for each of the 95 bRPLC experiments were subjected to quality control assessment in the QuaMeter ‘IDFree’ mode, producing forty-four metrics for each file along with its timestamp. Metrics included peak height and width distributions, MS scan rates, precursor charge states, and total ion […]


Signatures for Mass Spectrometry Data Quality

J Proteome Res
PMCID: 4104976
PMID: 24611607
DOI: 10.1021/pr401143e
call_split See protocol

[…] ting and training data sets: 224 on LTQ instruments, 85 on Exactive instruments, 380 on LTQ-Orbitrap instruments, and 461 on Velos-Orbitrap instruments (see Table ).For each QC data set, the NIST and Quameter metrics were calculated exactly as described in the original publications., The Quameter metrics were calculated using the software from the Tabb group (http://fenchurch.mc.vanderbilt.edu/sof […]


QC Metrics from CPTAC Raw LC MS/MS Data Interpreted through Multivariate Statistics

Anal Chem
PMCID: 3982976
PMID: 24494671
DOI: 10.1021/ac4034455
call_split See protocol

[…] QuaMeter software is a tool built on the ProteoWizard library to produce quality metrics from LC-MS/MS data. In its original release, QuaMeter generated metrics styled after those of Rudnick et al., i […]


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QuaMeter institution(s)
Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA

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