QuantPrime pipeline

QuantPrime specifications

Information


Unique identifier OMICS_02368
Name QuantPrime
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainers


  • person_outline Bernd Mueller-Roeber <>
  • person_outline Samuel Arvidsson <>

Additional information


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Information


Unique identifier OMICS_02368
Name QuantPrime
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages PHP, Python
Computer skills Basic
Stability Stable

Documentation


Maintainers


This tool is not maintained anymore.

Additional information


A registration is needed to access to tools.

Publication for QuantPrime

QuantPrime IN pipelines

 (3)
2018
PMCID: 5767312
PMID: 29375595
DOI: 10.3389/fpls.2017.02212

[…] the manufacturer's instructions. the cdna was diluted 1:5 with ddh2o and used as a template for the qpcr. the primers that were used in the qpcr were designed using quant-prime software (http://www.quantprime.de). the 10 μl qpcr reaction contained 2 μl of cdna, 1 μl of the primer pair mixture (5 μm), and 5 μl of 2 × master mix (lightcycler 480 sybr green i master; roche). the qpcr protocol […]

2015
PMCID: 4682430
PMID: 26463996
DOI: 10.1093/jxb/erv449

[…] götz et al., 2008)., approximately 500ng of total rna were reverse transcribed using superscript™ iii first-strand synthesis supermix for qrt-pcr kit (invitrogen). primers were designed with quantprime software (http://www.quantprime.de/) and are listed in supplementary table s1 at jxb online. constitutively expressed genes encoding, respectively, a ubiquitin and an atp synthase beta […]

2015
PMCID: 4682430
PMID: 26463996
DOI: 10.1093/jxb/erv449

[…] 500ng of total rna were reverse transcribed using superscript™ iii first-strand synthesis supermix for qrt-pcr kit (invitrogen). primers were designed with quantprime software (http://www.quantprime.de/) and are listed in supplementary table s1 at jxb online. constitutively expressed genes encoding, respectively, a ubiquitin and an atp synthase beta subunit (accession nos bi544002 […]

QuantPrime institution(s)
Max-Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany; Institute of Biochemistry and Biology, University of Potsdam, Potsdam-Golm, Germany; Department of Genetics, University of Silesia, Katowice, Poland
QuantPrime funding source(s)
Supported through the EU Marie Curie Research Training Network 'VaTEP – Vacuolar Transport Equipment for Growth Regulation of Plants' (MRTN-CT-2006-035833), the DAAD for a fellowship provided through the program 'Modern Applications of Biotechnology' (A/06/04209), the Polish Ministry of Science and Higher Education (research grant 2 P04C 056 30), the Interdisciplinary Research Center 'Advanced Protein Technologies' of the University of Potsdam, the Fonds der Chemischen Industrie (0164389), the Bundesministerium fuer Bildung und Forschung (BMBF) (GABI-FUTURE grant 0315046) and the BMBF for funding of the systems biology research unit 'GoFORSYS – Potsdam-Golm BMBF Forschungseinrichtung zur Systembiologie. Photosynthesis and Growth; a Systems Biology Based Approach' (FKZ 0313924).

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