An R-package to simulate gene expression and DNA methylation data. The R-package quantroSim is the supporting data simulation package for the quantro R/Bioconductor package which can be used to simulate data from the epigenome including gene expression (microarrays, but will be extended to include RNA-Seq) and DNA methylation (microarrays).

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quantroSim classification

quantroSim specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
R
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced

Publications

  • (Hicks and Irizarry, 2015) quantro: a data-driven approach to guide the choice of an appropriate normalization method. Genome biology.
    PMID: 26040460

quantroSim support

Maintainer

Credits

Institution(s)

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, 450 Brookline Avenue, Boston, MA 02115-5450, USA; Department of Biostatistics, Harvard School of Public Health, 677 Huntington Avenue, Boston, MA 02115, USA

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