quantsmooth statistics

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Number of citations per year for the bioinformatics software tool quantsmooth
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quantsmooth specifications

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Unique identifier OMICS_02067
Name quantsmooth
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.46.0
Stability Stable
Requirements
R(>=2.10.0), grid, quantreg
Maintained Yes

Versioning


No version available

Documentation


Publication for quantsmooth

quantsmooth citations

 (2)
library_books

Quantitative High Resolution Genomic Analysis of Single Cancer Cells

2011
PLoS One
PMCID: 3227572
PMID: 22140428
DOI: 10.1371/journal.pone.0026362

[…] bp. With these specifications, about 395.000 probes can be spotted on one array. The borders of the amplicons for the different MDA-MB-468 cell clones were calculated by the smoothing function of the Quantsmooth algorithm and validated afterwards by quantitative real-time PCR. For this purpose, a total amount of 53 SYBR green assays were designed flanking the calculated start- and endpoints shari […]

library_books

Analysis of Array CGH Data Using the R and Bioconductor Software Suite

2009
Comp Funct Genomics
PMCID: 2728899
PMID: 19696946
DOI: 10.1155/2009/201325

[…] uality, and particularly to apply a new normalization algorithm to correct for local spatial bias and continuous spatial gradients []. Two methods were available for smoothing array-CGH data, namely, quantsmooth, using a quantile smoothing method [] and waveslim, which is part of the R project, using smoothing algorithm denoising by wavelets []. Segmentation or breakpoint detection methods detect […]


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quantsmooth institution(s)
Department of Medical Statistics, Leiden University Medical Centre, RC, Leiden, Netherlands

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