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Quartet-net specifications

Information


Unique identifier OMICS_10309
Name Quartet-net
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Xiu-Feng Wan <>

Publication for Quartet-net

Quartet-net in publications

 (2)
PMCID: 3941989
PMID: 24555518
DOI: 10.1186/1752-0509-8-21

[…] on compatible split systems (trees) []; split-decomposition is consistent on weakly compatible split systems [,]; neighbor-net, qnet and superq are consistent on circular split systems [-]; and quartet-net is consistent on 2-weakly compatible split systems []. since 2-weakly compatible split system contains trees, circular split system, and weakly compatible split system as proper subsets, […]

PMCID: 3017387
PMID: 21081312
DOI: 10.1093/gbe/evq077

[…] from basic building blocks. in the computation of an unrooted tree or split network, these are phylogenetic trees on sets of four taxa, sometimes called “quartet trees.” one such method is the “quartet-net” method, or “qnet,” for short (). this algorithm takes a set q of weighted quartet topologies on x as input and, using a modification of neighbor-net, produces a set of weighted splits […]


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Quartet-net institution(s)
Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS, USA; CAS-MPG Partner Institute for Computational Biology, Key Laboratory of Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
Quartet-net funding source(s)
This work was partially supported by the Natural Science Foundation of China (No. 10971213), Department of Justice (2010-DD-BX-0596) and National Institutes of Health (NIAID RC1AI086830).

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