QuasiSeq specifications


Unique identifier OMICS_01963
Name QuasiSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.0-10-1
Stability Stable
Maintained Yes


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QuasiSeq article

QuasiSeq citation

PMCID: 4687377

[…] joint genome institute and read counts for each gene model were obtained using the htseq program developed by anders and co-workers [21]. differential expression analysis was performed using the quasiseq package in r [20]. for de analysis, pathogenic isolate (fo40) was compared against non-pathogenic isolate (fo36) at each time point. upper quartile normalization was used to normalize […]

QuasiSeq institution(s)
Statistical Engineering Division, National Institute of Standards and Technology, Gaithersburg, MD, USA; Department of Statistics, Iowa State University, Ames, IA, USA; University of Oxford, Oxford, UK; Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia
QuasiSeq funding source(s)
Supported by the National Research Initiative of the USDA-CSREES Grant No. 2008-35600-18786; the National Science Foundation grant number 0820610; the General Sir John Monash Scholarship; and the National Health and Medical Research Council Program Grant 490037.

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