QuickGO pipeline

QuickGO specifications

Information


Unique identifier OMICS_02276
Name QuickGO
Interface Web user interface
Restrictions to use None
Programming languages Javascript
License Apache License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

Publication for QuickGO

QuickGO IN pipelines

 (6)
2017
PMCID: 5704591
PMID: 29179763
DOI: 10.1186/s12915-017-0450-y

[…] genes were screened for the corresponding identifiers, the identifiers were assigned to higher level go-terms, and genes were sorted into groups of molecular function and biological process using quickgo [114, 115]. in gene subsets of particular importance (e.g., 50 most abundant transcripts per cell type), we re-checked the contained gene products without annotation by using the blastp […]

2015
PMCID: 4295849
PMID: 25590333
DOI: 10.1371/journal.pone.0115336

[…] annotate the generated contigs by searching the swiss-prot database with the blastx algorithm from ncbi database using a cut-off bitscore >50. the generated gene identifiers were used as input in quickgo from ebi (http://www.ebi.ac.uk/quickgo/gannotation) and to calculate go terms., all raw reads have been deposited in the sequence reads archive (sra) at ncbi, and could be accessed using […]

2015
PMCID: 4295849
PMID: 25590333
DOI: 10.1371/journal.pone.0115336

[…] the swiss-prot database with the blastx algorithm from ncbi database using a cut-off bitscore >50. the generated gene identifiers were used as input in quickgo from ebi (http://www.ebi.ac.uk/quickgo/gannotation) and to calculate go terms., all raw reads have been deposited in the sequence reads archive (sra) at ncbi, and could be accessed using srx732288 accession number., a list […]

2013
PMCID: 3720673
PMID: 23936103
DOI: 10.1371/journal.pone.0069801

[…] index release 12. (http://plantgrn.-noble.org/psrnatarget/; [10], [17], [37], [48], [75]) (data s4: table 1, 2). possible target functions of newly identified mirnas were searched manually using quickgo (http://www.ebi.ac.uk/quickgo/), a web based browser for gene ontology terms and annotations which are provided by the uniprot-goa project at the ebi, and were listed in table 2., in order […]

2010
PMCID: 2823690
PMID: 20047682
DOI: 10.1186/1471-2164-11-4

[…] the degree of direct and indirect enrichment in single go nodes (figure s4c in additional file 8). further go term visualization was implemented by links to external go term viewers (embl-ebi quickgo and srs). the go terms are accessible with search forms for go term identifiers, go term descriptions and protein descriptions. the database provides changeover between go term-, assigned […]

QuickGO institution(s)
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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