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Popular tool citations

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Associated diseases

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QuickMap specifications

Information


Unique identifier OMICS_15039
Name QuickMap
Interface Web user interface
Restrictions to use None
Input data Insertion site sequences.
Output data A mapper report, an analyzer report.
Programming languages Java
Database management system MySQL
Computer skills Basic
Stability Stable
Maintained No

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


This tool is not maintained anymore.

Publication for QuickMap

QuickMap in publications

 (4)
PMCID: 5682261
PMID: 29184362
DOI: 10.14202/vetworld.2017.1173-1183

[…] on the different epizootic indicators in the years 2017-2018 by the extrapolation method., the cartographical spatial dynamic study (cluster analysis) was conducted with microsoft excel 2013 and quickmap program (geoinformation systems)., during the period 1996 - (april) 2016, bt has been registered in 12 countries of the african continent (with 3987 outbreaks), 28 countries of europe […]

PMCID: 5347986
PMID: 28255155
DOI: 10.12659/MSM.903094

[…] are poorly understood., in this study, 874 unique lentiviral vector integration sites in human hacat keratinocytes after long-term culture were identified and analyzed with the online tool gtsg-quickmap and spss software., the data indicated that lentiviral vectors showed integration site preferences for genes and gene-rich regions., this study will likely assist in determining the relative […]

PMCID: 4109740
PMID: 25031062
DOI: 10.1016/j.bjhh.2014.03.002

[…] the homology of the human genome. only sequences that showed over 95% homology with sequences stored in the database were considered., then, sequences were submitted to analysis using the public quickmap tool, which allows detailed mapping of local integration of the retroviral vector. this tool analyzes a wide range of data on genomic features (genes, transcription start sites, cpg islands, […]

PMCID: 3875223
PMID: 24383045
DOI: 10.4172/2157-7633.S3-004

[…] sets that gene therapy trials can provide, the ability to quickly and efficiently analyze the integration profiles sites should help to identify candidate engraftment genes. one such utility is the quickmap utility provided by the gene therapy safety group (gtsg) []. the quickmap utility relies on cancer gene lists provided by the catalogue of somatic mutations in cancer (cosmic) [] as well […]


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QuickMap institution(s)
Department of Transplantation Immunology, University of Heidelberg, Heidelberg, Germany; Research Group Pharmacology of Cancer Treatment, German Cancer Research Center (DKFZ), Heidelberg, Germany; Department of Medical Biometry and Informatics, University of Heidelberg, Heidelberg, Germany; Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany; HUSAR Bioinformatics Lab, Department of Molecular Biophysics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Department of Experimental Surgery, Medical Faculty Mannheim, University of Heidelberg, Heidelberg, Germany; Department of Molecular Oncology of Solid Tumors Unit, German Cancer Research Center (DKFZ), Heidelberg, Germany; Center for Tumor Diagnostics and Therapy, Paracelsus Hospital, Osnabrueck, Germany
QuickMap funding source(s)
This work was supported by grants FR1732/3-1 and RO3500/1-1 of the Priority Program SPP1230 of the German Research Foundation (Bonn, Germany), the HW & J Hector Foundation (Mannheim, Germany), the Alfried Krupp von Bohlen und Halbach Foundation (Essen, Germany), the Ingrid zu Solms Foundation (Frankfurt, Germany) and the Hella B├╝hler Foundation (Heidelberg, Germany).

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