QuickRNASeq specifications

Information


Unique identifier OMICS_10985
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data In addition to raw sequence reads in FASTQ format, the only other required inputs are a reference genome file in FASTA format and a corresponding gene annotation file in GTF (gene transfer format).
Input format FASTQ, GTF
Output data The dynamic visualization features enable end users to explore and digest RNA-seq data analyses results intuitively and interactively, and to gain deep insights into RNA-seq datasets.
Operating system Unix/Linux
Programming languages Javascript, Perl, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2
Stability Stable
Requirements edgeR, reshape, ggplot
Maintained Yes

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Additional information


http://baohongz.github.io/QuickRNASeq/

QuickRNASeq articles

QuickRNASeq institution(s)
Early Clinical Development, Pfizer Worldwide R&D, Cambridge, MA, USA; Inflammation & Immunology Research Unit, Pfizer WRD, Cambridge, MA, USA

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