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QuPath specifications


Unique identifier OMICS_14868
Name QuPath
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained Yes



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  • person_outline Peter Hamilton <>

Publication for QuPath

QuPath in publications

PMCID: 5884516
PMID: 29617441
DOI: 10.1371/journal.pone.0194594

[…] areas with abundant tils in a 400× magnification (high-power fields [hpf]) were pictured with the use of cellsens standard 1.9 (olympus, tokyo, japan). enumeration of til were carried out using qupath software, following the instruction on the official website (https://qupath.github.io/) []. til density was calculated as the mean number of counted cell numbers divided by field area (350 μm […]

PMCID: 5862619
PMID: 29568398
DOI: 10.18632/oncotarget.24481

[…] n = 248, wt/wt n = 321). using the ihc methodology optimized in line with the remark guidelines in whole face cc sections, we assessed bcl-xl protein expression using digital pathology software, qupath [], to give a numerical representation of both the extent and the intensity of staining (h-score), based on the mean expression of all cores (3 cores for each patient). in line with remark […]

PMCID: 5768988
PMID: 29290625
DOI: 10.1016/j.stemcr.2017.11.021

[…] panel of the ndp.view 2 u123888-01 software (hamamatsu, photonics, france). otherwise tissue sections were imaged using the zeiss confocal microscope lsm780. image analysis was performed using qupath, an open-source software for quantitative pathology., thoracic and inguinal mammary glands were dissected from 9-week-old p38α(lox/lox);mmtv-cre and mmtv-cre virgin females or 6-week-old […]

PMCID: 5543466
PMID: 28448072
DOI: 10.1038/ctg.2017.18

[…] using an optiview antibody detection system (ventana medical systems inc., tucson, usa) and a cell marque ready to use rabbit monoclonal antibody to ptgs2 (ventana, catalog number 760-4254). qupath (queen’s university belfast, northern ireland) image analysis software facilitated digital immunoscoring. more detailed information is provided in the (online). a h-score was calculated based […]

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QuPath institution(s)
Northern Ireland Molecular Pathology Laboratory, Centre for Cancer Research and Cell Biology, Queen’s University Belfast, Belfast, Northern Ireland, UK; Tissue Pathology, Belfast Health and Social Care Trust, Belfast, Northern Ireland, UK; Centre for Experimental Medicine, Queen’s University Belfast, Belfast, Northern Ireland, UK; Cancer Epidemiology and Health Services Research Group, Centre for Public Health, Queen’s University Belfast, Belfast, Northern Ireland, UK
QuPath funding source(s)
Supported by Invest Northern Ireland (RDO0712612); Cancer Research UK Accelerator (C11512/A20256); by Cancer Research UK, Experimental Cancer Medicine Centre Network, the NI Health and Social Care Research and Development Division, the Sean Crummey Memorial Fund, the Tom Simms Memorial Fund and the Friends of the Cancer Centre; by the Health and Social Care Research and Development Division of the Public Health Agency in Northern Ireland and Cancer Research UK (ref. SPI/5069/14); the Friends of the Cancer Centre by Cancer Research UK (ref. C37703/A15333 and ref. C50104/A17592) and the HSC R&D office of Northern Ireland (ref. EAT/4905/13) and by the NI Public Health Agency.

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