R programming language

Performs graph classification and regression by machine learning algorithms. Graphkernels is a package in R and Python with efficient C++ implementations of various graph kernels including the following prominent kernel families: (1) simple kernels between vertex and/or edge label histograms, (2) graphlet kernels, (3) random walk kernels, and (4) the Weisfeiler-Lehman graph kernel.

Allows R users to generate Graphical User Interfaces (GUIs) for R scripts. RGG is a general GUI framework for R that consists of two parts: an XML based GUI definition language and a GUI engine. It is available both as a stand-alone software (RGGRunner) and as a plug-in for JGR. The software can be used to make biostatistical and bioinformatical solutions directly available for routine applications.

Generates interactive graphs in R. RJSplot contributes to the development of interactive visualization packages in R oriented toward computational biology research. The software implements 16 interactive graphical representations. It provides a dynamic and customizable visualization and allows actions such as browsing, movement, zoom adjustment, viewing values, or identifying variables. It can be used to allow a comprehensive visualization of information and an improved diffusion of scientific results.

Designed to integrate the major strengths of R and Cytoscape environments by providing a general Java to R interface. By linking these two environments, Cyrface allows one to use Cytoscape as a graphical user interface for R packages. It also enables Cytoscape apps to access the wealth of methods implemented in R. Cyrface is now compatible with Cytoscape 3.

Provides several tools for specialized analysis of animal social networks. Asnipe offers also access to other tools for more general analysis of network structure. This software can (1) define a group by individual matrix, (2) generate an association matrix from observations of individuals co-occuring in time and space, (3) perform permutation tests on the observation stream or (4) calculate lagged association rates between individuals or classes of individuals.

Provides a single destination for your Shiny applications, R Markdown documents, interactive HTML widgets, static plots, and more. RStudio Connect empowers analysts to share and manage the content created in R. Users of the RStudio IDE can publish content to the application with the click of a button and immediately be able to manage that content from a user-friendly web application. RStudio Connect is designed to bring the power of data science.

An easy-to-use statistical software with more 200 statistical tests, procedures and graphs. MedCalc allows to perform data management, ROC curve analysis, method comparison and method evaluation including Bland and Altman plot, Passing and Bablok, and Deming regression, and a lot of graphs.

Aims to assist users with their flow cytometry analysis.

Allows users to handle and remove packages from a given library. Packrat enhances user project directory by storing its package dependencies inside it. This tool tries to make projects more: (1) isolated, (2) portable, (3) reproducible.

Allows users to connect the Glottolog database with the R programming language. Lingtypology is an R package for linguistic mapping.

Provides method for astrochronologic testing, astronomical time scale construction, and time series analysis. Astrochron can be used for statistical analysis and modeling routines that are relevant to paleoclimate analysis.