R programming language

Includes functions allowing development of Bioconductor packages. Biobase supplies different information that can be used for replacing R functions.

Provides several tools for specialized analysis of animal social networks. Asnipe offers also access to other tools for more general analysis of network structure. This software can (1) define a group by individual matrix, (2) generate an association matrix from observations of individuals co-occuring in time and space, (3) perform permutation tests on the observation stream or (4) calculate lagged association rates between individuals or classes of individuals.

Imports excel files into R. The readxl package makes it easy to get data out of Excel and into R. The range argument of this method provides many ways to limit the read to a specific rectangle of cells. The simplest usage is to provide an Excel-like cell range. This R package has no external dependencies, so it is easy to install and use on all operating systems. It is designed to work with any tabular data. Readxl is a part of the tidyverse, an ecosystem of packages designed with common APIs.

Provides method for astrochronologic testing, astronomical time scale construction, and time series analysis. Astrochron can be used for statistical analysis and modeling routines that are relevant to paleoclimate analysis.

Allows R users to generate Graphical User Interfaces (GUIs) for R scripts. RGG is a general GUI framework for R that consists of two parts: an XML based GUI definition language and a GUI engine. It is available both as a stand-alone software (RGGRunner) and as a plug-in for JGR. The software can be used to make biostatistical and bioinformatical solutions directly available for routine applications.