R programming language

Performs graph classification and regression by machine learning algorithms. Graphkernels is a package in R and Python with efficient C++ implementations of various graph kernels including the following prominent kernel families: (1) simple kernels between vertex and/or edge label histograms, (2) graphlet kernels, (3) random walk kernels, and (4) the Weisfeiler-Lehman graph kernel.

Allows R users to generate Graphical User Interfaces (GUIs) for R scripts. RGG is a general GUI framework for R that consists of two parts: an XML based GUI definition language and a GUI engine. It is available both as a stand-alone software (RGGRunner) and as a plug-in for JGR. The software can be used to make biostatistical and bioinformatical solutions directly available for routine applications.

Generates interactive graphs in R. RJSplot contributes to the development of interactive visualization packages in R oriented toward computational biology research. The software implements 16 interactive graphical representations. It provides a dynamic and customizable visualization and allows actions such as browsing, movement, zoom adjustment, viewing values, or identifying variables. It can be used to allow a comprehensive visualization of information and an improved diffusion of scientific results.

Designed to integrate the major strengths of R and Cytoscape environments by providing a general Java to R interface. By linking these two environments, Cyrface allows one to use Cytoscape as a graphical user interface for R packages. It also enables Cytoscape apps to access the wealth of methods implemented in R. Cyrface is now compatible with Cytoscape 3.

Provides several tools for specialized analysis of animal social networks. Asnipe offers also access to other tools for more general analysis of network structure. This software can (1) define a group by individual matrix, (2) generate an association matrix from observations of individuals co-occuring in time and space, (3) perform permutation tests on the observation stream or (4) calculate lagged association rates between individuals or classes of individuals.