R-CHIE pipeline

R-CHIE specifications

Information


Unique identifier OMICS_09289
Name R-CHIE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Irmtraud M. Meyer <>

Information


Unique identifier OMICS_09289
Name R-CHIE
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Irmtraud M. Meyer <>

Publication for R-CHIE

R-CHIE IN pipelines

 (2)
2017
PMCID: 5499600
PMID: 28449096
DOI: 10.1093/nar/gkx303

[…] expected accuracy) (70), the fit of which with the shape data was calculated (see material and methods). to refine our model, we further analysed its base pairs in a comparative setting, using r-chie (72) on sequences from the los alamos compendium (82) to produce covariation scores (supplementary figure s6). most of our predicted model was confirmed by the results of the covariation […]

2014
PMCID: 4086097
PMID: 24810851
DOI: 10.1093/nar/gku292

[…] the minimum-free energy structure for an input sequence while taking the effects of co-transcriptional folding into account, thereby greatly improving the prediction accuracy for long sequences. r-chie is a program to visualise rna secondary structures as arc diagrams, allowing for easy comparison and analysis of conserved base-pairs and quantitative features. the web site server dispatches […]

R-CHIE institution(s)
Department of Computer Science; Department of Medical Genetics, Centre for High-Throughput Biology, University of British Columbia, Vancouver, Canada

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