R'MES statistics

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Associated diseases

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R'MES specifications


Unique identifier OMICS_15533
Name R'MES
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 3.1.0
Stability Stable
Source code URL https://mulcyber.toulouse.inra.fr/download//rmes/rmes/3.1.0CMake/rmes-3.1.0-Source.tar.gz
Maintained Yes



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  • person_outline Sophie Schbath <>

Publication for R'MES

R'MES in publications

PMCID: 3636136
PMID: 23637638
DOI: 10.1371/journal.pgen.1003474

[…] analyses were conducted using the geneious pro package (v5.6, available from http://www.geneious.com) . the significance of deviations in uwaa motifs within neurexin genes were measured using the r'mes program as described ., pcr reactions () were designed to detect alternative mrna isoforms in the mouse transcriptome, including all the simple alternative splicing events in the mouse refseq […]

PMCID: 3718332
PMID: 23594878
DOI: 10.1098/rsob.130010

[…] algorithm with default parameters. oric3 structures were determined by mapping ucm (uncharacterized motif) sequences in the genome of lal14/1 using the ugene search tool with default parameters., r'mes software [] was used to evaluate the significance of motif frequency in s. islandicus genomes. this statistical method compares the observed count of each motif to the count predicted […]

PMCID: 3124433
PMID: 21595908
DOI: 10.1186/1471-2105-12-173

[…] tools exist to detect unusual sequence regions. an established generic and powerful class of models captures local dependencies by way of markov models, as supported, for example, by rsat [,], r'mes [], quickscore [], and spatt []. different implementations have their own respective strengths and features, including providing a service online with user support, optimized run-time […]

PMCID: 2958812
PMID: 20975945
DOI: 10.1371/journal.pgen.1001166

[…] chromosome with their orientation switching at the dif site –. although archaea lack an ftsk homologue, we searched for the most frequent and skewed sequences in thermococcales genomes by using the r'mes program (, see ). we used the e. coli genome to validate this methodology and, as expected, we found that kops are the most over-represented skewed 8nt-long sequences. the corresponding diagram […]

PMCID: 2936528
PMID: 20838592
DOI: 10.1371/journal.pgen.1001106

[…] of dna methylation coldspots. in contrast, one might expect that weak cpg islands might show little evidence for selection of particular sequence motifs., to evaluate this possibility, we used the r'mes statistical package, which uses markovian models to evaluate the exceptionality of motif (or ‘word’) frequency in dna. when looking at 6-letter words under the m1 model, which analyzes a given […]

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R'MES institution(s)
Laboratoire Statistique et Génome, Evry, France; Unité Mathématique, Informatique et Génome, Jouy-en-Josas, France

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