RPHAST specifications

Unique identifier:
OMICS_13079
Software type:
Package/Module
Restrictions to use:
None
Input format:
.gff, .bed, .fa, .maf
Operating system:
Unix/Linux, Mac OS, Windows
License:
Other
Version:
1.6
Maintained:
Yes
Name:
R PHylogenetic Analysis with Space/Time models
Interface:
Command line interface
Input data:
Alignment, gene annotations, the assumed tree topology
Output data:
Statistic plots for comparative and evolutionary genomics
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable

versioning

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No versioning.

RPHAST distribution

download

RPHAST support

Documentation

Maintainer

  • Adam Siepel <>

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Publications

Institution(s)

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, USA; Division of Biostatistics, University of California, San Francisco, CA, USA

Funding source(s)

National Science Foundation (grant DBI-0644111); National Institutes of Health (grant R01-GM082901); David and Lucile Packard Fellowship for Science and Engineering

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