R spider statistics

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R spider specifications

Information


Unique identifier OMICS_03955
Name R spider
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for R spider

R spider in publications

 (7)
PMCID: 5352145
PMID: 28257468
DOI: 10.1371/journal.ppat.1006260

[…] and immunity., we also used the relaxed p-value of 1x10-4 to examine whether these polymorphisms where enriched for true positive associations and cellular networks. to accomplish this, we used the r spider program [], which organizes gene products into cellular pathways based on the reactome signaling network and the kegg metabolic network to determine if interactions are over-represented […]

PMCID: 4637874
PMID: 26549748
DOI: 10.1038/srep16550

[…] (positive) selection with a beb posterior for each category >0.5., gene enrichment analyses were performed using david (database for annotation, visualization and integrated discovery) and r spider. all gene groups are potentially informative despite lower rankings and serve to guide biological interpretation. enriched biological process (bp) and molecular function go terms […]

PMCID: 4398050
PMID: 25687947
DOI: 10.1093/chemse/bjv001

[…] the adjusted phenotypes., go analyses were performed using the david algorithm (), with the benjamini correction for multiple tests. to identify ensembles of interacting gene products, we used the r-spider program in the bioprofiling.de web portal (). the r-spider algorithm incorporates data for approximately 2000 genes from the d. melanogaster genome and combines signaling and metabolic […]

PMCID: 3998935
PMID: 24763140
DOI: 10.1371/journal.pntd.0002649

[…] were no specific categories that were either enriched or decreased ()., we used drosophila genes as proxy for tsetse genes to identify potential interactions between specific pathways using the r-spider program . multiple pathways were identified as enriched during parasite infection, including those involved in cell division (mitotic spindle organization and elongation), protein […]

PMCID: 3845637
PMID: 24171912
DOI: 10.1093/gbe/evt156

[…] related genes in the group of the fast evolving genes. the program also corrected p values for multiple adjustment effects by false discovery rate., we searched for networks of interacting psg using r-spider (). this tool determines whether interactions between input genes are greater than expected by chance. input data were the complete list of genes classified as psg in all drosophila species […]


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R spider institution(s)
Helmholtz Zentrum M√ľnchen-German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Neuherberg, Germany

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