R2oDNA Designer statistics

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Tool usage distribution map

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Associated diseases

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R2oDNA Designer specifications

Information


Unique identifier OMICS_04767
Name R2oDNA Designer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_04767
Name R2oDNA Designer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for R2oDNA Designer

R2oDNA Designer in publications

 (2)
PMCID: 5582390
PMID: 28878819
DOI: 10.1186/s13036-017-0072-5

[…] controlled under an l-arabinose-inducible promoter pbad [], with two terminators (tet and t1┬át2) added to both sides and two i-scei cleavage sites inserted at both ends. two linkers (l1 and l2) from r2odna designer [] were used for the easy assembly of plasmids with various replication origins in a plug-and-play fashion.fig. 2 , the expression level of the i-scei endonuclease (under control […]

PMCID: 4244866
PMID: 25505788
DOI: 10.3389/fbioe.2014.00060

[…] serve as priming sites for the pcr-directed addition of biologically neutral linker sequences that serve as homologous sequences for overlap-directed assembly. these sequences can be designed with r2odna designer (casini et al., , ), an in silico tool that was developed to automatically design orthogonal linker sequences for use in modal and other applications. similar strategies have also […]


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R2oDNA Designer institution(s)
Imperial College London, London, UK

R2oDNA Designer reviews

 (2)
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Man Cam

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Desktop
any specific reason why it is not available anymore?

Hailong Li

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This is a very good web software for your sequence design. Fantastic work! Previously I saved it for limited to around 16mer orthogonal sequence design. Now it's updated to neutral and up to 200mer bases. Great! I would like to save it as a standalone software and hope it can be maintained forever.