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R3D Align specifications
Information
| Unique identifier | OMICS_04470 |
|---|---|
| Name | R3D Align |
| Interface | Web user interface |
| Restrictions to use | None |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Ryan R. Rahrig <>
Information
| Unique identifier | OMICS_04470 |
|---|---|
| Name | R3D Align |
| Software type | Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | MATLAB |
| Computer skills | Advanced |
| Stability | Stable |
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Publication for R3D Align
library_books
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.
2013 Nucleic Acids Res
PMCID: 3692076
PMID: 23716643
DOI: 10.1093/nar/gkt417
R3D Align in publication
library_books
Effective alignment of RNA pseudoknot structures using partition function posterior log odds scores
PMCID: 4339682
PMID: 25727492
DOI: 10.1186/s12859-015-0464-9
[…] conformations to align rna 3d structures. hoksza and svozil [] developed a pairwise comparison method based on 3d similarity of generalized secondary structure units. rahrig et al. [] presented the r3d align tool for performing global pairwise alignment of rna 3d structures using local superpositions. he et al. [] developed the rass web server for comparing rna 3d structures using both sequence […]
R3D Align institution(s)
Department of Mathematics and Statistics, Ohio Northern University, Ada, OH, USA
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