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RAAR specifications


Unique identifier OMICS_12406
Alternative name Regulators of Androgen Action Resource
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • Primates
    • Homo sapiens



  • person_outline Hannelore Heemers

Publication for Regulators of Androgen Action Resource

RAAR citations


Substructure determination using phase retrieval techniques

Acta Crystallogr D Struct Biol
PMCID: 5947775
PMID: 29533237
DOI: 10.1107/S2059798317014462

[…] sts with δ varying between 1.0σ and 1.4σ with a step of 0.05σ were performed, with the automatic decrease of δ disabled. All other parameters and options were kept the same in the charge-flipping and RAAR tests. A total of 2000 trials, with 200 Fourier iterations per trial, were run for each test.For each data set, the substructure obtained from PRASA is compared with the ‘final substructure’ usin […]


Distinctive Nuclear Localization Signals in the Oomycete Phytophthora sojae

Front Microbiol
PMCID: 5288373
PMID: 28210240
DOI: 10.3389/fmicb.2017.00010

[…] localization by PHYSO_357835338−387 required the putative cNLS separately from the epitope 2 of the PY-NLS-like sequence, histidine at 371 and lysine at 372 were mutated to alanines, resulting in 370-RAAR-373 (the canonical PY-NLS consensus requires only a single basic residue at this position). Although 2XGFP-PHYSO_357835338−387 (H371A/K372A) appeared slightly more cytoplasmic than wild type (LNC […]


Altered RNA editing in 3′ UTR perturbs microRNA mediated regulation of oncogenes and tumor suppressors

Sci Rep
PMCID: 4793219
PMID: 26980570
DOI: 10.1038/srep23226

[…] ated artifacts (arising from incorrect alignment of reads to highly homologous/repetitive regions in the genome). To overcome these problems, we developed an RNA-Seq based Alignment Artifact Removal (RAAR) pipeline (https://github.com/bioliyezhang/RAAR) to eliminate these potential sequencing artifacts (see and for details). Our method is applicable to both RNA editing events and DNA mutation ca […]


Radiation damage in a micron sized protein crystal studied via reciprocal space mapping and Bragg coherent diffractive imaging

PMCID: 4711611
PMID: 26798804
DOI: 10.1063/1.4919641

[…] ojection of the crystal. The programs used in the data analysis were ImageJ and MATLAB. During the reconstructions, a combination of Error Reduction (ER) and Relaxed Averaged Alternating Reflections (RAAR) algorithms were used to retrieve the phase information. RAAR is generally able to deal with higher levels of noise in the data. In the algorithm used here, the support was updated using shrink-w […]

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RAAR institution(s)
Department of Cancer Genetics; Department of Urology, Roswell Park Cancer Institute, Buffalo, NY, USA; Department of Cancer Biology, Cleveland Clinic, Cleveland, OH, USA; Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, USA; Department of Cancer Biology, Cleveland Clinic, Cleveland, OH, USA; Department of Urology Department of Hematology/Medical Oncology, Cleveland Clinic, Cleveland, OH, USA
RAAR funding source(s)
National Cancer Institute at the National Institutes of Health (grant CA166440); Prostate Cancer Foundation (Young Investigator Award)

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