RabDB specifications


Unique identifier OMICS_13438
Name RabDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • person_outline José Pereira-Leal

Publications for RabDB

RabDB citations


Genome Wide Identification, Phylogeny and Expression Profile of Vesicle Fusion Components in Verticillium dahliae

PLoS One
PMCID: 3714278
PMID: 23874720
DOI: 10.1371/journal.pone.0068681

[…] rg/), and to the SNARE Database (http://bioinformatics.mpibpc.mpg.de/snare/snareSubmitSequencePage.jsp), SM superfamily database 1.75 (http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=56815), and RabDB (http://www.rabdb.org/browse/rabify/) or Rab Database (http://bioinformatics.mpibpc.mpg.de/rab/rabMainPage.jsp) to verify the presence of domains. All genes of V. dahliae were subjected to TMHMM […]


The C. elegans Rab Family: Identification, Classification and Toolkit Construction

PLoS One
PMCID: 3504004
PMID: 23185324
DOI: 10.1371/journal.pone.0049387

[…] 69.5, Y71H2AM.12 and C56E6.2 should be classified as rab23, rab6 and rab31, respectively. Instead, Rabifier classifies these proteins to undefined subfamilies HypoRabX1, MetazoaRabX3 and CeRabY6 (www.rabdb.org). Interestingly, this high rate of success for Rab protein classification may not extend to all subfamilies. Rabifier correctly classifies only four of the 17 Rab31 genes manually identified […]

RabDB institution(s)
Instituto Gulbenkian de Ciencia, Oeiras, Portugal; Centro de Estudos de Doenças Crónicas, Faculdade de Ciencias Médicas da Universidade Nova de Lisboa, Lisboa, Portugal
RabDB funding source(s)
This work has been supported by the Fundação para a Ciência e a Tecnologia, under the grant PTDC/EBB-BIO/119006/2010, and PhD fellowship SFRH/BD/51880/2012.

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