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Citations per year

Number of citations per year for the bioinformatics software tool RACIPE

Tool usage distribution map

This map represents all the scientific publications referring to RACIPE per scientific context
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RACIPE specifications


Unique identifier OMICS_30276
Alternative name RAndom CIrcuit PErturbation
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License Apache License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes




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  • person_outline Herbert Levine
  • person_outline Jose Onuchic

Publication for RAndom CIrcuit PErturbation

RACIPE citation


Interrogating the topological robustness of gene regulatory circuits by randomization

PLoS Comput Biol
PMCID: 5391964
PMID: 28362798
DOI: 10.1371/journal.pcbi.1005456

[…] with ideas such as the existence of master regulators and network modularity[,].On the basis of this conceptual framework, we developed a new computational method, named random circuit perturbation (RACIPE), for modeling possible dynamic behaviors that are defined by the topology of a core gene regulatory circuit. In RACIPE, we focus the modeling analysis on the core circuit and regard the effect […]

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RACIPE institution(s)
Center for Theoretical Biological Physics, Rice University, Houston, TX, USA; Program in Systems, Synthetic and Physical Biology, Rice University, Houston, TX, USA; Department of Bioengineering, Rice University, Houston, TX, USA; Department of Biosciences, Rice University, Houston, TX, USA; Department of Physics and Astronomy, Rice University, Houston, TX, USA; Department of Chemistry, Rice University, Houston, TX, USA; The Jackson Laboratory, Bar Harbor, ME, USA
RACIPE funding source(s)
Supported by the Physics Frontiers Center National Science Foundation (NSF) grant PHY-1427654 and the NSF grants DMS-1361411 and PHY-1605817, and John S. Dunn Foundation Collaborative Research Award, the start-up fund from the Jackson Laboratory and the National Cancer Institute of the National Institutes of Health under Award Number P30CA034196.

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