RACIPE statistics

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Citations per year

Number of citations per year for the bioinformatics software tool RACIPE
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Tool usage distribution map

This map represents all the scientific publications referring to RACIPE per scientific context
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Associated diseases

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Popular tool citations

chevron_left Gene regulatory network inference Network simulation chevron_right
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RACIPE specifications

Information


Unique identifier OMICS_30276
Name RACIPE
Alternative name RAndom CIrcuit PErturbation
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License Apache License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Versioning


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Maintainers


  • person_outline Herbert Levine
  • person_outline Jose Onuchic

Publication for RAndom CIrcuit PErturbation

RACIPE citation

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Interrogating the topological robustness of gene regulatory circuits by randomization

2017
PLoS Comput Biol
PMCID: 5391964
PMID: 28362798
DOI: 10.1371/journal.pcbi.1005456

[…] with ideas such as the existence of master regulators and network modularity[,].On the basis of this conceptual framework, we developed a new computational method, named random circuit perturbation (RACIPE), for modeling possible dynamic behaviors that are defined by the topology of a core gene regulatory circuit. In RACIPE, we focus the modeling analysis on the core circuit and regard the effect […]


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RACIPE institution(s)
Center for Theoretical Biological Physics, Rice University, Houston, TX, USA; Program in Systems, Synthetic and Physical Biology, Rice University, Houston, TX, USA; Department of Bioengineering, Rice University, Houston, TX, USA; Department of Biosciences, Rice University, Houston, TX, USA; Department of Physics and Astronomy, Rice University, Houston, TX, USA; Department of Chemistry, Rice University, Houston, TX, USA; The Jackson Laboratory, Bar Harbor, ME, USA
RACIPE funding source(s)
Supported by the Physics Frontiers Center National Science Foundation (NSF) grant PHY-1427654 and the NSF grants DMS-1361411 and PHY-1605817, and John S. Dunn Foundation Collaborative Research Award, the start-up fund from the Jackson Laboratory and the National Cancer Institute of the National Institutes of Health under Award Number P30CA034196.

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