RACKJ protocols

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description
RACKJ computational protocol

RACKJ specifications

Information


Unique identifier OMICS_07373
Name RACKJ
Alternative name Read Analysis & Comparison Kit in Java
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.95
Stability Stable
Maintained Yes

Subtool


  • ShuffleFastq

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Additional information


http://rackj.sourceforge.net/Manual/index.html https://sourceforge.net/projects/rackj/?source=navbar

Publication for Read Analysis & Comparison Kit in Java

RACKJ IN pipelines

 (2)
2016
PMCID: 5090222
PMID: 27804982
DOI: 10.1038/srep35846

[…] gene expression levels, 75-mers sequences were aligned to the genomic sequence annotated in tair10 using the blat program19 and rpkm (reads per kbp per million reads) values were computed using the rackj (read analysis & comparison kit in java, http://rackj.sourceforge.net/) software., gene clustering was performed using the maccu software package (http://maccu.sourceforge.net/) to build […]

2016
PMCID: 5090222
PMID: 27804982
DOI: 10.1038/srep35846

[…] the genomic sequence annotated in tair10 using the blat program19 and rpkm (reads per kbp per million reads) values were computed using the rackj (read analysis & comparison kit in java, http://rackj.sourceforge.net/) software., gene clustering was performed using the maccu software package (http://maccu.sourceforge.net/) to build co-expression clusters based on pairwise co-expression […]

RACKJ institution(s)
Institute of Plant and Microbial Biology, Taipei, Taiwan

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