Restriction site associated DNA sequencing data analysis software tools

Restriction site associated DNA sequencing data analysis software tools Restriction site associated DNA sequencing (RAD-seq) is a method to identify and score RAD markers, a type of polymorphic genetic marker that are used for population genetic studies, particularly for species with limited existing sequence data. RAD-seq combines restriction enzymes and molecular identifiers to associate sequence reads to particular individuals. Software tools are used for data pre-processing and processing, duplicate read removal, genome assembly, SNP detection, and phylogenetic inference.

Data preprocessing

Data processing

Genome variant analysis

Protein sequence/Expression

Annotation

Phylogenomics

Workflows

File manipulation

Utilities

Unclassified tools