Restriction site associated DNA sequencing data analysis software tools

RAD markers were first implemented using microarrays (Miller et al., 2007) and later adapted for NGS (Baird et al., 2008). RAD-seq could generate a genome-wide density of genetic markers. RAD-seq has been used to study population differentiation and selection (Emerson et al., 2010; Hohenlohe et al., 2011).

Data preprocessing

Data processing

Data analysis

Annotation

Genome variant analysis

Workflows

File manipulation

Utilities

Unclassified tools