Protocols

RADB specifications

Information


Unique identifier OMICS_05760
Name RADB
Alternative name Database of Rheumatoid Arthritis-related Polymorphisms
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publication for Database of Rheumatoid Arthritis-related Polymorphisms

RADB citations

 (2)
library_books

Reevaluation of the evolutionary events within recA/RAD51 phylogeny

2013
BMC Genomics
PMCID: 3637515
PMID: 23574621
DOI: 10.1186/1471-2164-14-240

[…] ix. Subsequently, a phylogenetic tree was inferred by distance-based NJ algorithm as described previously []. In the tree of Set-1, we observe three major clades, namely: (i) recA (ii) RADα and (iii) RADβ (see Figure A). Upon close inspection, the branching pattern is largely in accordance with Lin et al. []; however, there are some notable differences. Specifically: (i) we identified a new archae […]

call_split

Detection of novel recombinases in bacteriophage genomes unveils Rad52, Rad51 and Gp2.5 remote homologs

2010
Nucleic Acids Res
PMCID: 2896510
PMID: 20194117
DOI: 10.1093/nar/gkq096
call_split See protocol

[…] of Verify3D () and Prosa () methods assessing the 3D models likelihood (see scores in Supplementary Table S1 and Figure S2). The same procedure was followed for generating Sak4 and Gp2.5 models using RadB from Thermococcus kodakarensis (PDB:2cvh) and Gp2.5 from phage T7 (PDB:1je5) as templates, respectively. The multiple sequence alignments were processed with Jalview (). Structural models were re […]

RADB institution(s)
College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China; Yiwu Hospital, Zhejiang University, Yiwu, China; Genome Analysis Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China; Department of Pathology, Harbin Medical University, Harbin, China

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