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RadishBase specifications

Information


Unique identifier OMICS_06119
Name RadishBase
Restrictions to use None
Maintained Yes

Publication for RadishBase

RadishBase citations

 (3)
library_books

Hydrogen peroxide, nitric oxide and UV RESISTANCE LOCUS8 interact to mediate UV B induced anthocyanin biosynthesis in radish sprouts

2016
Sci Rep
PMCID: 4941517
PMID: 27404993
DOI: 10.1038/srep29164

[…] S, UFGT, PAP1 and PAP2 were designed using Primer Express® version 3.0 (Applied Biosystems). In order to design the UVR8 primer, the UVR8 mRNA of Arabidopsis was blasted against the radish data base (RadishBase), and a similar mRNA (Unigene ID: UN17090, Length: 1690) was obtained. The similarity is 90%. As UVR8 proteins occur widely among plant species and are well conserved, the products from thi […]

library_books

Draft Sequences of the Radish (Raphanus sativus L.) Genome

2014
PMCID: 4195494
PMID: 24848699
DOI: 10.1093/dnares/dsu014

[…] ov/Blast.cgi?PAGE=Proteins) with an E-value cut-off of 1E−10, and InterProScan against InterPro databases. To evaluate the accuracy of the gene prediction, radish unigene sequences available from the RadishBase (http://bioinfo.bti.cornell.edu/cgi-bin/radish/index.cgi) were used for BLAST searches (E-value cut-off of 1E−10) against the sequences of the RSA_r1.0.Functional domains in the predicted g […]

library_books

Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.)

2013
BMC Genomics
PMCID: 3816612
PMID: 24144082
DOI: 10.1186/1471-2164-14-721

[…] r each accession and no same bases at the potential SNP site between the two compared accessions were considered. Detailed information related to all radish SSRs and SNPs is publicly available at the RadishBase []. […]

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