RAFTS3 pipeline

RAFTS3 specifications


Unique identifier OMICS_12068
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Beta
Requirements MATLAB Compiler Runtime
Maintained Yes


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  • person_outline Ricardo Assunção Vialle <>

Publication for RAFTS3

RAFTS3 IN pipeline

PMCID: 5313630
PMID: 28209838
DOI: 10.1128/genomeA.01666-16

[…] determined using bowtie2 (10). gene prediction was performed using genemarkes version 4.29 (11). annotation of the protein coding genes was based on best-hit searches against the nr database using rafts3 (12) and interproscan (13). aragorn version 1.2.36 (14) was used for trna gene identification., a total of 7,445,102 paired-end reads were obtained for f. multimorphosa cbs 980.96t genome […]

RAFTS3 institution(s)
Laboratory of Bioinformatics, Sector of Professional and Technological Education, Federal University of Paraná, Curitiba, Paraná, Brazil; Department of Biochemistry and Molecular Biology, Federal University of Paraná, Curitiba, Paraná, Brazil
RAFTS3 funding source(s)
National Institute of Science and Technologies of Biological Nitrogen Fixation, Fundação Araucária, CAPES and CNPq

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