RAMBL specifications


Unique identifier OMICS_17016
Alternative name reference-based ribosome assembly
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A reference gene sequence and the aligned read.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
GCC, Bowtie2, Samtools, Bedtools, Sickle, Seqtk
Maintained Yes




No version available



  • person_outline Feng Zeng

Publication for reference-based ribosome assembly

RAMBL institution(s)
Department of Automation, Xiamen University, Xiamen, Fujian, China; Bioinformatics Division, TNLIST and Department of Automation, Tsinghua University, Beijing, China; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China; Earth Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Bioinformatics Division, TNLIST, and Department of Computer Science and Technology, Tsinghua University, Beijing, China; Program in Computational Biology and Bioinformatics, University of Southern California, Los Angeles, CA, USA
RAMBL funding source(s)
Supported by the National Natural Science Foundation of China (Nos: 61503314, 61561146396 and 61203282) and the Tsinghua TNLIST Big Data Grant.

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