RAMMCAP specifications

Information


Unique identifier OMICS_01481
Name RAMMCAP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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RAMMCAP article

RAMMCAP citation

2010
PMCID: 2829047

[…] against various sequence databases, including 16s rdna. it then produces statistics on species associations and on metabolic pathway associations using the seed subsystems database as its guideline. rammcap uses the fast clustering algorithm cd-hit [98] to cluster translated orfs by high sequence similarity. the rationale is that many similar putative orfs strengthen the hypothesis […]

RAMMCAP institution(s)
California Institute for Telecommunications and Information Technology, University of California, San Diego, La Jolla, CA, USA

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